Today was the first full day of the Massachusetts Institute of Technology (MIT) Critical Data Marathon–a weekend hackathon designed to highlight the incredible resource of the MIMIC-II database.
The weekend is run in partnership with Sana Mobile and MIT H@cking Medicine. In true MIT H@cking Medicine form, the weekend was designed to bring together various disciplines that would not otherwise interact in order to brainstorm and crowd source innovative ideas. Brilliant minds from computer science, medicine, nursing, pharmacy, biostatisticts, epidemiology, informatics, business, health policy, and the social sciences were all present. More importantly, academia and industry mingled together.
MIMIC-II stands for Multi-parameter Intelligent Monitoring in Intensive Care II. It is a publicly available database that is part of the Multi-parameter Intelligent Monitoring in Intensive Care project funded by the National Institute of Biomedical Imaging and Bioengineering at the Laboratory of Computational Physiology at MIT.
MIMIC-II is the only ICU database that encompasses patient demographics, clinical laboratory data, categorical admission diagnoses as well as detailed therapeutic profiles such as intravenous medication drip rates and hourly fluid balance trends for the duration of the ICU stay.
The MIMIC-II is an intensive care unit research database applying automated techniques to aggregate high-resolution diagnostic and therapeutic data from a large, diverse population of adult intensive care unit patients. This freely available database is intended to support epidemiological research in critical care medicine and serve as a resource to evaluate new clinical decision support and monitoring algorithms.
The data is from all adult intensive care units (medical intensive care unit, surgical intensive care unit, cardiac care unit, cardiac surgery recovery unit) between 2001 and 2007 at a tertiary care hospital, the Beth Israel Deaconess Medical Center in Boston, MA. It consists of 25,328 intensive care unit stays. Learn more about the database by clicking here.
The format of the hackathon mixed traditional and nontraditional. In traditional fashion, there was a social meetup Friday night and pitching and team forming on Saturday morning. The teams will work throughout the weekend and then present their projects on Sunday evening. At that time, they will be judged, and winners will be announced.
To change up the pace, the weekend is also intermingled with hip hop, kickboxing, and mindful meditation.
There were about 13 teams that formed ideas.
Queen Bee of Boston Med Tech hackathons, Andrea Ippolito, Co-Leader of MIT H@cking Medicine, was at the center of the event, managing people and inspiring ideas! She tells us about the weekend and the teams.
We interviewed a number of the teams.
One of my old co-fellow nephrologists from Massachusetts General Hospital, Chunmei Huang, MD, MS, was the physician on Team JUCCY. The team consisted of 4 members interested in solving the age old mystery of a patient’s true fluid status to help determine if a diuretic or IV saline needs to be given.
Nephrologists will just not give up seeking a non-invasive measure of a person’s true fluid status. There must be something better than skin tinting, the mysterious jugular venous pressure cardiologists wave about, and ultrasounding a patient’s inferior vena cava.
Team Oxygenators looked at all the parameters that affect oxygenation of an ICU patient and how this affects outcomes.
They have a fancy diagram. Apparently, a lot of factors affect oxygenation.
It is true that pulmonologists obsess over successfully predicting if a patient “will fly” after extubation–if a patient will successfully breathe on his own after the intubation tube and ventilator support is removed.Team Intubate Extubate looked at factors affecting intubation and successful extubation from a ventilator.
Team Survival Index, which consisted of Matthew Doiron, Vipan Nikore, Stephen Flaherty, Aaron Stupple, and Susan Desanto-Madeya, looked at factors that predict mortality or survival.
This is a fantastic database open to any researcher. You can apply here. Other super successful studies and papers have already been completed, but the opportunities are endless!
Stay tuned to find out the winners!
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